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Adibvafa/README.md

Hello, I'm Adib! 🍁

Website LinkedIn Google Scholar Twitter Hugging Face

🤖 AI Researcher   |   🧠 Biologist   |   🌐 Community Builder


🚀 Featured Research

CodonTransformer Logo

CodonTransformer

Nature Communications

Website GitHub Paper

Engineered a SOTA model to optimize DNA sequences for protein expreesion in 164 organisms, releasing the largest toolkit for codon optimization.

CodonTransformer Logo

MedRAX

ICML 2025

Website GitHub Paper

Built the world's most advanced medical reasoning agent for chest x-ray interpretation, outperforming general purpose and medical trained models.

BioReason Logo

BioReason

NeurIPS 2025

Website GitHub Paper

Created the first reasoning model in biology that would reason on DNA and natural language to predict how a mutation would lead to a disease.


🛠 Tech Stack

Python PyTorch TensorFlow Keras Scikit-Learn Pandas Numpy JAX Hugging Face OpenCV GCP AWS Azure Docker Git Linux Bash C++ Java SQL CUDA


Pinned Loading

  1. bowang-lab/BioReason bowang-lab/BioReason Public

    BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model | NeurIPS '25

    Jupyter Notebook 406 56

  2. bowang-lab/BioReason-Pro bowang-lab/BioReason-Pro Public

    BioReason-Pro: Advancing Protein Function Prediction with Multimodal Biological Reasoning

    Jupyter Notebook 128 15

  3. bowang-lab/MedRAX bowang-lab/MedRAX Public

    MedRAX: Medical Reasoning Agent for Chest X-ray - ICML 2025

    Python 1.3k 211

  4. CodonTransformer CodonTransformer Public

    CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression

    Python 228 39

  5. snap-stanford/memorilla snap-stanford/memorilla Public

    🦍 Memorilla: Latent Semantic Memory for LLMs

    Python 807 62

  6. bowang-lab/EchoJEPA bowang-lab/EchoJEPA Public

    EchoJEPA: A Latent Predictive Foundation Model for Echocardiography

    Python 352 57