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@DessimozLab

Dessimoz Lab

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  1. read2tree read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 162 19

  2. foldtree foldtree Public

    Infers a phylogenetic tree from protein structures

    Jupyter Notebook 113 21

  3. FastOMA FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 104 17

  4. OMArk OMArk Public

    Python 95 7

  5. edgehog edgehog Public

    Infering ancestral synteny with hierarchical orthologous groups

    Python 41 4

  6. phylo-io phylo-io Public

    Phylo.IO JS tree viewer

    JavaScript 36 13

Repositories

Showing 10 of 62 repositories
  • HogProf Public

    Phylogenetic profiling with orthology data

    DessimozLab/HogProf's past year of commit activity
    Jupyter Notebook 14 MIT 2 6 0 Updated Nov 12, 2026
  • fastoma-bench Public

    Automatic benchmarking of Fastoma over time

    DessimozLab/fastoma-bench's past year of commit activity
    Python 2 0 0 0 Updated Nov 12, 2026
  • FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    DessimozLab/FastOMA's past year of commit activity
    Python 104 MPL-2.0 17 22 1 Updated Nov 11, 2026
  • ESM3di Public

    Fine-tune ESM models on specialized datasets for feature extraction and 3Di prediction, enabling structural phylogenetics, functional site prediction, and more.

    DessimozLab/ESM3di's past year of commit activity
    Jupyter Notebook 2 MIT 0 1 0 Updated Nov 11, 2026
  • FoldOMA-benchmark-suite Public

    repo that compares a few runs of foldOMA with fastOMA

    DessimozLab/FoldOMA-benchmark-suite's past year of commit activity
    Python 0 0 0 0 Updated Nov 10, 2026
  • edgehog Public

    Infering ancestral synteny with hierarchical orthologous groups

    DessimozLab/edgehog's past year of commit activity
    Python 41 MIT 4 3 3 Updated Nov 9, 2026
  • yeast_fusion_segmenter Public

    retrain yolov8 to segment and label yeast cells with interupted fusion phenotypes

    DessimozLab/yeast_fusion_segmenter's past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Nov 6, 2026
  • foldtree2 Public

    foldtree2

    DessimozLab/foldtree2's past year of commit activity
    Jupyter Notebook 15 AGPL-3.0 6 2 0 Updated Nov 6, 2026
  • EukaryOMA-data Public

    Collection of src and data including figures and tables of the EukaryOMA paper

    DessimozLab/EukaryOMA-data's past year of commit activity
    0 0 0 0 Updated Nov 5, 2026
  • pyopa Public

    A fast implementation of optimal pairwise alignments with python

    DessimozLab/pyopa's past year of commit activity
    C 8 MPL-2.0 2 0 0 Updated Nov 4, 2026
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