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bed-format
Here are 6 public repositories matching this topic...
A package for handling whole genome alignments by Pádraic Corcoran and Henry Barton
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Feb 7, 2020 - Python
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Oct 5, 2026 - Julia
Python pipeline for processing BED files for BEDbase
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Oct 28, 2026 - Python
Fast and efficient conversion of Nanopore modBAM from guppy basecaller to BED files for differential methylation and machine learning predictions
bam-files bioinformatics nanopore pipeline genomics sequencing methylation epigenetics oxford-nanopore cpg basecaller bed-format long-read-sequencing genomic-analysis methylation-analysis guppy oxford-nanopore-data oxford-nanopore-sequencing epigenetics-data modbam
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Feb 1, 2026 - Shell
Offline RNA, DNA, protein, single-cell and genomic interval benchmarks with a five-assay demo and traceable reports.
benchmarking bioinformatics rna-seq genomics continuous-integration reproducible-research data-validation proteomics chip-seq atac-seq dna-seq single-cell-rna-seq bed-format peak-calling research-software genomic-intervals cut-and-run cut-and-tag narrowpeak variant-benchmarking
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Nov 3, 2026 - Python
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