bgc

(Meta-)genome screening for functional and natural product gene sequences

zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables

Methods and classes to support Biosynthetic Gene Cluster analysis

The Functional Order (FunOrder) tool - Identification of essential biosynthetic genes through computational molecular co-evolution – novel tool that allows automated identification of essential genes in a biosynthetic gene clusters (BGC) based solely on genomic data

BGCViz - a shiny web app, which uses genomic coordinates of BGCs from different sources for a comprehensive comparison.

BGCViz - a shiny web app, which uses genomic coordinates of BGCs from different sources for a comprehensive comparison.

File conversion scripts for DNA sequence data

Hướng dẫn Lập trình C của Beej — Vietnamese translation of Beej's Guide to C

Nextflow DSL2 pipeline that predicts biosynthetic gene clusters with antiSMASH, DeepBGC and GECCO, and compares them across samples, tools or a reference genome in one BGC-QUAST report, with optional BiG-SCAPE gene cluster families.

Clystere is a Nextflow pipeline for automated biosynthetic gene cluster (BGC) discovery and comparative analysis.

My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.

A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data