Multivariate Imputation by Chained Equations
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
A Python library for reading and writing Flow Cytometry Standard (FCS) files
Fast and accurate cross-correlation over arbitrary time lags.
Fast and accurate cross-correlation over arbitrary time lags. Moved to:
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
Javascript / node.js code to read FCS flow cytometry data
🧫 Read Flow Cytometry Standard (FCS) files in Julia
Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.
Interactive flow and mass cytometry gating in R for SingleCellExperiment and GatingSet objects. Browser version: https://gate-lab.github.io/
Console Media Player with basic commands
Free, open-source flow cytometry analysis workbench for conventional, spectral and mass cytometry. Gating, compensation, spectral unmixing, QC, clustering/UMAP, statistics and publication figures. Runs locally, your data never leaves your machine. Includes MCP server for AI agents, and Python and R API clients.
Browser-based software for manual gating of flow and mass cytometry data, with FlowJo workspace and Gating-ML exchange, compensation, statistics and figure export.
Tool for validating FCS file specification compliance
Django-based Repository for Flow Cytometry Data
Low-level Flow Cytometry Standard (FCS) file serializer/deserializer
PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.
A collection of visualization examples for Flow Cytometry Data
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